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This is all the more likely due to Cydia iself being something the user was just using to upgrade Cydia, and then the user relauches it right after the upgrade. However, people are now relying on it to do a “late stash” of a key folder (Applications), and thereby are more likely to be doing other things while this happens without realizing that this is about to be really important, and I’m seeing a couple reports of some application icons disappearing. I could easily imagine it has been used one billion times, which is why I generally like to trust this code. This code has been used to stash /Applications on every jailbreak since then (including jailbreaks where the stash step was executed on the data extracted in an IPSW file on a computer, such as PwnageTool). I wrote this stash logic in 2008, and have made minimal modifications to it since (with only one even remotely major change, last year, to deal with data protection flags). Saurik released Cydia 1.1.26 shortly after releasing 1.1.25 to fix an issue with disappearing app icons with the previous update.
HOW LONG DOES CYDIA IMPACTOR TAKE UPDATE
Also, Apple just released iOS 9.1, so I’m pushing this Cydia update now in order to minimize the number of people who run into some problem with a “late stash” after the signing window closes, which will happen very very soon. However, as of last night, Pangu has told me that they will not be pushing a change to break this feature. It was not clear to me in which direction they would “fix” the issue, and so I’ve been concerned about pushing an update that stashes /Applications. After contemplating just not stashing almost anything, we made a painful “executive decision” to make a wider sandbox carve-out than normal and allow for these folders to be moved, but that Pangu would spend time attempting to fix this somehow. After doing a bunch of testing without moving this folder, we ran into a similar issue with another folder that Cydia was still stashing. When Pangu and I were discussing the jailbreak release for iOS 9, there was originally a limitation of the jailbreak (due to Apple’s mitigations in iOS 9 being “actually effective”) that made it impossible to free disk soace by moving /Applications from the system partition to the user partition. So if you were wondering why “Preparing Filesystem” was so quick when you launched Cydia for the first time after Pangu iOS 9 jailbreak, then it was because it did not move the jailbreak content to the user partition from the system partition. Cydia 1.1.25 now moves the jailbreak content to the user partition from the system partition. In case, you missed it, saurik has released couple of updates for Cydia Installer.